PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00134902001
Common NameGSBRNA2T00134902001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family Dof
Protein Properties Length: 225aa    MW: 23798.2 Da    PI: 8.9531
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00134902001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof119.31.4e-372484262
               zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                         ++++l+cprC+stntkfCyynny+ sqPr+fCk+CrryWt+GG+lr++PvGg +rk+ k+s
  GSBRNA2T00134902001 24 QQEQLPCPRCESTNTKFCYYNNYNFSQPRHFCKSCRRYWTHGGTLRDIPVGGVSRKSSKRS 84
                         68999***************************************************98875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-28272IPR003851Zinc finger, Dof-type
PfamPF027016.3E-332682IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.642882IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103066IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MPSDLNDSRR VTTKVPHGGA AAEQQEQLPC PRCESTNTKF CYYNNYNFSQ PRHFCKSCRR  60
YWTHGGTLRD IPVGGVSRKS SKRSRAFSSV AAGSRNFPLQ ATPVPFPPSS YGGGITAAKG  120
NTSSLYGGFT TLLNNNAAAS RHGPGGGFNG PGNGPDGFGL GLGHGSYFEE VRFGQGITVW  180
PFSTGATDAN VADTSHAAPV HATWQLEGLE SKVGFVAGDY LAWD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00134902001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013607294.11e-142PREDICTED: dof zinc finger protein DOF5.8-like
SwissprotQ9FGD61e-109DOF58_ARATH; Dof zinc finger protein DOF5.8
TrEMBLA0A078CWW61e-166A0A078CWW6_BRANA; BnaC09g07610D protein
STRINGBra037135.1-P1e-125(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22862874
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66940.12e-88Dof family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]